PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042194t1
Common NameTCM_042194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 538aa    MW: 60212 Da    PI: 4.3407
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042194t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.51.7e-501795373374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lL +  +a+ s+++ela++++ rl++ asp+g++++Rla+y++ AL ++ +             ++s   s++  aa+ +f++++P+ +f+h
  Thecc1EG042194t1 179 HLLKAYGDAMGSEQMELAEEIIRRLKDKASPTGNSLERLAFYLAVALDKQANY----------LGQES---SKNYEAAFMAFYQIFPYGRFAH 258
                       7888889999***************************************9998..........22222...3445566778************ PP

              GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.va 183
                       +taN+aIlea+  + ++vHi+Df+i++G+QWp+L++aL  +  g  +lR+T ++  e++   + ++ eet+++L + A ++g+++e + + ++
  Thecc1EG042194t1 259 FTANSAILEAIPADaTAVHIVDFEIGNGIQWPPLIEALGRK--GLRMLRLTSIKWGEEDgscNPTTFEETKKQLWRHAMNFGLRLEVEEMdIE 349
                       ***********888799*********************985..999********9888889999*************************9444 PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.vvvvveqe..adh..nsesFlerflealeyysalfdsl 271
                         +++++  + r ++ E la n+++ l ++   ++ +  + +++Lk+ k l ++  v+   +   a+   +  sF   f   + y+ al++s+
  Thecc1EG042194t1 350 GLVSEIKKARVRGRKSEWLAFNCMVGLPHMG--KGRSVVHVEHFLKTAKALISNeGVIAFGNGigAEKwiEYRSFSSFFEGQMVYCHALLESM 440
                       488999999999999***************8..444444589********866525555555422222235669******************* PP

              GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlg 361
                       e+   +  e+ri +E  ++ ++++++  +++ e + r+         l+e GF+p +ls +++ +a+ l+++ +s  y v    e+++++vlg
  Thecc1EG042194t1 441 EQF--QLLEARIAMECLFVVPHLSSLSNAQQWEETVREC------GSLSELGFQPQRLSRENYLEARELVSEGESS-YWVRtdgEDNNQMVLG 524
                       999..567**************99998888888333333......5699***********************9966.888767888******* PP

              GRAS 362 WkdrpLvsvSaWr 374
                        ++ pLv vS+Wr
  Thecc1EG042194t1 525 YMGAPLVRVSSWR 537
                       ************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.453151515IPR005202Transcription factor GRAS
PfamPF035145.9E-48179537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTPILFAIEM MEMEFNPWWP IYNPIDSQLE EVALYLAEMD AQVSSFEFST SSVSIEDFSD  60
VSSSSALLSS TLYGSQTHGY PFSGNHLLGI LPREQCLPSV DEGDAPSNDQ FLLDGGENFS  120
EWMASDSSIS SQQIFTEDVG SQNLSPISRE VSVDVPSIQA SLVLPAEYVE VDDQLVILHL  180
LKAYGDAMGS EQMELAEEII RRLKDKASPT GNSLERLAFY LAVALDKQAN YLGQESSKNY  240
EAAFMAFYQI FPYGRFAHFT ANSAILEAIP ADATAVHIVD FEIGNGIQWP PLIEALGRKG  300
LRMLRLTSIK WGEEDGSCNP TTFEETKKQL WRHAMNFGLR LEVEEMDIEG LVSEIKKARV  360
RGRKSEWLAF NCMVGLPHMG KGRSVVHVEH FLKTAKALIS NEGVIAFGNG IGAEKWIEYR  420
SFSSFFEGQM VYCHALLESM EQFQLLEARI AMECLFVVPH LSSLSNAQQW EETVRECGSL  480
SELGFQPQRL SRENYLEARE LVSEGESSYW VRTDGEDNNQ MVLGYMGAPL VRVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1619553721375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982609.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A061GZ260.0A0A061GZ26_THECC; GRAS family transcription factor, putative
STRINGEOY345670.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1927257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-23RGA-like 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]