PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042116t1
Common NameTCM_042116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 332aa    MW: 35991.4 Da    PI: 9.3038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042116t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.24.3e-32171238666
               TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 
                       ++++++h+kv+gRdRR+Rl+  caar+F+L++eLG+++d++ti WLl+qa+p+i+++tgt       +
  Thecc1EG042116t1 171 KTTKDRHAKVDGRDRRIRLPPVCAARIFQLTRELGYKTDGETIAWLLRQAEPSIIAATGTgisspgsT 238
                       689*********************************************************55444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-26172231IPR005333Transcription factor, TCP
PROSITE profilePS5136925.832173227IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAAGRGCTRL PPHFHLCFFA KKFCVSSCLK QNGCLRALAQ MNSSSSAATV PCRPLSSLPS  60
GFHKRMEEDS CMEKRKERKD SLRVEEGLRY AIKSGISGAN QARVCSNTTQ KMGTSPPIIH  120
LRVDFSSMCD ILMASENMGL EMALPNPSTR KPRPFSQKKP SSSKSKLVTC KTTKDRHAKV  180
DGRDRRIRLP PVCAARIFQL TRELGYKTDG ETIAWLLRQA EPSIIAATGT GISSPGSTTP  240
PALSTPTTGL APFSSGPLLF SSDCSPSLTF CEPKVVSENQ DVVKRSVVSR AEPVLPPFEF  300
DLVTNFDLEF SANEIAMLQS VTGTHGTEGK D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279343.10.0LOW QUALITY PROTEIN: transcription factor TCP14-like
TrEMBLA0A061H0A30.0A0A061H0A3_THECC; Transcription factor-like protein
STRINGEOY344340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.12e-25TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]