PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041899t1
Common NameTCM_041899
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 164aa    MW: 17877.8 Da    PI: 9.5247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041899t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000673860123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      + C+ C+k+Fs+   L  H  +H
  Thecc1EG041899t1 38 FACKTCSKRFSSFQALGGHRASH 60
                      78**********99999998887 PP

2zf-C2H211.70.000884106123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F     L  H+r+H
  Thecc1EG041899t1  84 HECSICGLEFAMGQALGGHMRRH 106
                       78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-936106No hitNo description
PfamPF139126.8E-123762IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.183865IPR007087Zinc finger, C2H2
SMARTSM003550.373860IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139122.0E-1183108IPR007087Zinc finger, C2H2
SMARTSM003550.2284106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.34984111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTMKRGREIE AMDMANCLML LSKVGQTDPS KHFQGRVFAC KTCSKRFSSF QALGGHRASH  60
KKPRLGGGDN LSEMPASPKK PKTHECSICG LEFAMGQALG GHMRRHRAAS NEGLVTRDLL  120
PEMKKSRDAE SDLCLDLNLT PWGSDLELKL GKVAPAPVVH CFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016517.11e-118C2H2 and C2HC zinc fingers superfamily protein, putative
SwissprotQ424108e-42ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A061GXE61e-118A0A061GXE6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGVIT_06s0004g04180.t016e-54(Vitis vinifera)
STRINGPOPTR_0009s03280.18e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-43C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]