PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036913t1
Common NameTCM_036913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 310aa    MW: 34253.6 Da    PI: 7.4333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036913t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83.1e-30153211259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh 
  Thecc1EG036913t1 153 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHA 211
                       7***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.74147213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-29147211IPR003657WRKY domain
SuperFamilySSF1182904.71E-25150212IPR003657WRKY domain
SMARTSM007745.1E-34152212IPR003657WRKY domain
PfamPF031061.3E-24154210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MESAWVDTNL DLNINIFNHR NKALKRESHG EVAESEVKVP LKQETGVLVE ELNRVSAENK  60
KLTEMLTVVC EHYNSLQNKF MELVSKNCEN EAATSKKRKA EFEDYTNMIG FNGNAESSCS  120
DEESSKRPKE SIKAKISRVY VRTNPSDSSL IVRDGYQWRK YGQKVTRDNP SPRAYFKCSF  180
APSCPVKKKV QRSAEDPSIL VATYEGEHNH AHSSPAELSL STSSIPDPCS APVSAPTKCS  240
APTVTLELMQ PGFMGDDAKK PVQQIDAPGI QQILAQQMAA SLTRDPNFTA ALAAAISGRV  300
VDQTRLEKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201512101371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011727.20.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A061GIH60.0A0A061GIH6_THECC; WRKY transcription factor, putative
STRINGEOY293460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24772872
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-85WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]