PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036473t1
Common NameTCM_036473
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18742 Da    PI: 9.835
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036473t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-151050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i+n+s r+vt+ kR++g+ KK +EL +LC++ ++ iifs+
  Thecc1EG036473t1 10 LISNESARKVTLKKRKAGLWKKLNELTTLCGVAACAIIFST 50
                      59*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.512150IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-20176IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-18160IPR002100Transcription factor, MADS-box
CDDcd002661.42E-21285No hitNo description
PRINTSPR004043.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARKRVTLEL ISNESARKVT LKKRKAGLWK KLNELTTLCG VAACAIIFST YDAQPDIWPS  60
PIEAYNVLEK FKNLPAEIQG KYMMDQNSLL RRSIMQLNVR LAKQRTKNRE LEMDLVMAES  120
MAGENNCDLN NLEYLKELVH LLKEKIKFVT QKIEKISFAL HE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKRVTLELISNESARKVTLKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981834.11e-111PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A061FKW01e-115A0A061FKW0_THECC; AGAMOUS-like 87
STRINGEOY173121e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-35AGAMOUS-like 87
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]