PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034722t1
Common NameTCM_034722
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 226aa    MW: 24493.8 Da    PI: 8.4921
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034722t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.35.5e-292104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+
  Thecc1EG034722t1   2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLC 94 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallk 98 
                       q++a+++l++
  Thecc1EG034722t1  95 QAAADTVLQG 104
                       ****998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.2771107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPETQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAADT VLQGGALRPI PGILAGVRTP  120
SCDESSDRFC FNSCDFQSRY AQSKPLMTMM MMENQSASAA SDLSLSLTTK LGGGRRGSGR  180
RYEEERKRPR AAAAASLYSE ESEITTFKSK ENEGSQERKI LNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018527.11e-165LOB domain-containing protein 38, putative
SwissprotQ9SN231e-65LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A061FGD51e-165A0A061FGD5_THECC; LOB domain-containing protein 38, putative
STRINGPOPTR_0002s12020.16e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-64LOB domain-containing protein 38
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]