PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033799t1
Common NameTCM_033799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 284aa    MW: 32055.1 Da    PI: 6.5099
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033799t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.49.1e-30271611128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                       lppG+rF P++eel+++yL+ k +++      +   + i+e+++y++eP+dLp+          + ++ ++F+ +++k   g+r++r +k g+
  Thecc1EG033799t1  27 LPPGCRFFPSEEELLNHYLTGKNSSDAsdradMYGYDLIRELNLYDYEPSDLPEgvcfvhG--CRGRKRHWFCYTERK---GERSKRRAKGGF 114
                       79********************9998845543333458***************65665332..355666777777775...679999899*** PP

               NAM  83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       W++ gk k+v++ ++ l g+k+ +vfy++ + +k+++t+W+m ey+l
  Thecc1EG033799t1 115 WRKIGKVKDVFDGENVLLGTKTRFVFYEAnSVKKAVRTSWIMYEYAL 161
                       ************99999**********763778899*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3422177IPR003441NAC domain
PROSITE profilePS5100536.77327177IPR003441NAC domain
PfamPF023651.1E-1728161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MCNNSDSILP LIEIPGDSSR TRSLYHLPPG CRFFPSEEEL LNHYLTGKNS SDASDRADMY  60
GYDLIRELNL YDYEPSDLPE GVCFVHGCRG RKRHWFCYTE RKGERSKRRA KGGFWRKIGK  120
VKDVFDGENV LLGTKTRFVF YEANSVKKAV RTSWIMYEYA LLHHRKASFV LCRVFVKSRA  180
GNSVSENVLS SCAEESVAAV RHIGIQHDGF LSPDILEAEI NGDDFTKELD QSISTRSVSV  240
PSFEFPSVVQ PELPNDLVGS QLATNNLWAI VEGNFIELND LGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-182617814169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017182.20.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A061FCE90.0A0A061FCE9_THECC; NAC domain protein, IPR003441, putative
STRINGEOY144070.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-23NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]