PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031172t1
Common NameTCM_031172
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 460aa    MW: 49832 Da    PI: 6.6099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031172t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-063503881154
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Thecc1EG031172t1 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388
                       5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.519339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-7349393No hitNo description
SuperFamilySSF474591.05E-11349405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0037350394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9353396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MADEFNTGTN WWDSSRTNTR FDAAGSSSSS SGLNNSLGSF GWATEMVDIK AARSSMDSVS  60
SVSGSSVVFQ DAPKLQGVPD HPPPGDLHMM GLGLSSQAMD WNQALLRGDK SESSFRSMLQ  120
DNLNSSANYQ QETAGMGSSQ VQWRDKMFSG VGGDASVNEF KQISRGFSLD QSQFSPHGSS  180
SDSTVTCQGL PSSFQMDSTA LYGSPSTILQ GLLGSENQAQ QSSYENRSIN YQYGAAAASY  240
GMNTNELLPS WSKVPQFLRS SPPKQHLHGQ LHFSNNAPFW NPSAAASMTD VRPGFFPSLQ  300
TQFPTGNFDE KPKNISEGRD SSTVVKKSGN EPASKRPRNE TPTPLPAFKV RKEKMGDRIT  360
ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVSVLSTPYM KSGAAIQHQQ SSEKSKDPEG  420
PKQDLRSRGL CLVPVSSTFP VTHESTVDFW TPTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021136.10.0Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ8GXT31e-101BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A061F6M70.0A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-100bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]