PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029798t1
Common NameTCM_029798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 314aa    MW: 35338.8 Da    PI: 8.9056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029798t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.9e-33622021128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                       lp+G++F+Ptd+e++ e+L++kv ++       ++++   ++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  Thecc1EG029798t1  62 LPAGVKFDPTDQEIL-EHLEAKVISDMrklhplIDEFIPtLEGEnGICYTHPERLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgs 152
                       799***********9.999999887774665432222222333336**********.555666777******************744446555 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++vl+ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Thecc1EG029798t1 153 ETRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 202
                       788************.9*************66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-3756221IPR003441NAC domain
PROSITE profilePS5100533.6462221IPR003441NAC domain
PfamPF023653.1E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTWCNNSDDD RALQLVTAAD STKEPASVSD TKTDDIRIII CPSCGHNIPY QDQAGIHDLP  60
GLPAGVKFDP TDQEILEHLE AKVISDMRKL HPLIDEFIPT LEGENGICYT HPERLPGVSK  120
DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRPVLVGGA VKGFKKILVL  180
YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVASKVFY QTQPRQCGPS SVKDTLDRKL  240
KNRSRHDKSP IAKSSSTAFV HEYFNPPFIP FDHGSHNRES PPPLIPNLVV QGDGSSFIRL  300
ASDTSKGRLE RKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472040.0KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025530.20.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A061GGB90.0A0A061GGB9_THECC; NAC domain containing protein 73
STRINGEOY281520.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]