PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029321t1
Common NameTCM_029321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 294aa    MW: 33770.2 Da    PI: 8.9793
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029321t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.81.9e-48191501128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       l pGfrFhPtd+elv +yLk+kve+k +++ + ik+vdiyk++PwdLpk  k+++ +eke+yfF++r +ky+++ r+nr+t+sg+Wkatg dk
  Thecc1EG029321t1  19 LLPGFRFHPTDQELVGFYLKRKVEKKLFSI-DLIKHVDIYKYDPWDLPKvsKLSTvTEKELYFFCRRGRKYRNSIRPNRVTSSGFWKATGIDK 110
                       579***************************.99***************5453333477899******************************** PP

               NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++s    +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Thecc1EG029321t1 111 PIYSVgeFHGCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150
                       ****8443345***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5216180IPR003441NAC domain
PROSITE profilePS5100551.21319180IPR003441NAC domain
PfamPF023657.6E-2521150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEVEKMISSG NNEDDEDVLL PGFRFHPTDQ ELVGFYLKRK VEKKLFSIDL IKHVDIYKYD  60
PWDLPKVSKL STVTEKELYF FCRRGRKYRN SIRPNRVTSS GFWKATGIDK PIYSVGEFHG  120
CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PVGQNPSLSN TKKDNLPEAE VWTLCRIFKR  180
DVSYRKYALD WQSNKNPSKQ NTTASGSRTC SIESDNSVEV KSFGVLDEKE IERKLANDHL  240
LGRTQFFAGT TQVPSYLSFS NPNGGEFFGQ QNWDELRPVV DYTLGTSLLY SDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-451918617171NO APICAL MERISTEM PROTEIN
1ut4_B2e-451918617171NO APICAL MERISTEM PROTEIN
1ut7_A2e-451918617171NO APICAL MERISTEM PROTEIN
1ut7_B2e-451918617171NO APICAL MERISTEM PROTEIN
4dul_A2e-451918617171NAC domain-containing protein 19
4dul_B2e-451918617171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024860.20.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A061GE930.0A0A061GE93_THECC; NAC domain containing protein 42, putative
STRINGEOY274820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-90NAC domain containing protein 42
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]