PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026314t1
Common NameTCM_026314
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 353aa    MW: 40110.9 Da    PI: 10.3164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026314t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32285342359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Thecc1EG026314t1 285 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 342
                       9*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-18236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.7E-34271342IPR003657WRKY domain
PROSITE profilePS5081130.194278344IPR003657WRKY domain
SuperFamilySSF1182902.88E-27281342IPR003657WRKY domain
SMARTSM007741.1E-38283343IPR003657WRKY domain
PfamPF031062.9E-27285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEQANKA AIESCHRVLS LLSSPKDQVQ YSNLMMETGE AVFKFKKVVS LLSNDLSHAR  60
VRKLKKFRST LPQKIFLESP NCRTILSPKP LQVYRSNLFD KPPFDLDARA KNHLQLTPKV  120
FFENPSFEMN SSVKPSLRTA QIKPSQDYHF VHHQQQMQRL QFQQQQVKYQ ADMAFSKNNS  180
GMNIKFDGSS CTPTMSSTRS FVSSLSMDGS VTNLDGNSFH LIGMPHHFDQ ISQQSRRRCS  240
GRAEDGSMKC GTTGKCHCSK RRKLRIKRSI KVPAISNKVA DIPPDEYSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERCLEDPSM LIVTYEGEHN HSRLLSTQSA HT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-202813411271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030538.10.0PREDICTED: probable WRKY transcription factor 74 isoform X1
SwissprotQ93WU61e-124WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A061F1100.0A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRINGEOY110400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-114WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]