PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025676t1
Common NameTCM_025676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 104aa    MW: 11744.9 Da    PI: 11.0247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025676t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.81.4e-181152344
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      i  +s r+ tf kR++g+lKKA+ELS LC++e++vii+s ++
  Thecc1EG025676t1 11 ITKNSARKATFKKRKKGLLKKASELSALCGTEASVIIYSLSN 52
                      677899********************************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.264149IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-12323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-122338IPR002100Transcription factor, MADS-box
PRINTSPR00404