PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025441t1
Common NameTCM_025441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 136aa    MW: 15555.7 Da    PI: 7.9443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025441t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.8e-212710153128
               NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +e yfF+   ++y+t ++ + +tksgyWkatg+++++ + ++e vg k+++vfy g+ap++++++W+m+e+++
  Thecc1EG025441t1  27 RKANEAYFFTIVPQAYSTAEQMEGSTKSGYWKATGETEQIDH-HNEIVGFKRIFVFYCGEAPTAKESSWMMNEFSV 101
                       256799**********************************99.999****************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.1911126IPR003441NAC domain
SuperFamilySSF1019414.97E-2026106IPR003441NAC domain
PfamPF023651.9E-931100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSCRWKMLNN LNSTRHNDIA CNFTKLRKAN EAYFFTIVPQ AYSTAEQMEG STKSGYWKAT  60
GETEQIDHHN EIVGFKRIFV FYCGEAPTAK ESSWMMNEFS VNPSLVQDNE LDLRTNVTKF  120
CIAYVKLGPI FAYRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281939.11e-56NAC domain-containing protein 59-like
TrEMBLA0A061EZ341e-98A0A061EZ34_THECC; Uncharacterized protein
STRINGEOY100562e-99(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.17e-16NAC domain containing protein 50
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]