PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022197t1
Common NameTCM_022197
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 215aa    MW: 23188.1 Da    PI: 7.0543
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022197t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99.1e-3548116873
               TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec 73 
                       ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++ +a    +c
  Thecc1EG022197t1  48 SKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAaheISC 116
                       79********************************************************66555332333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2948113IPR005333Transcription factor, TCP
PROSITE profilePS5136927.85348102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGSEMALHKF STANHNHQNS NINSVVSDES TPKTQLALPT RKPVSSLSKD RHTKVNGRGR  60
RVRMPALCAA RIFQLTRELG HRSDGETIEW LLRQAEPSII AATGSGTVPA AHEISCPAGP  120
TMTSASPPSV SCQVHPVGVG SGSVVAGMYT MTAPPPNCRL DLCQPVGFQY SAVGRSGYQH  180
MPFTALLLQP TTAAEEVEER QRVEDEEEEI RHHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027375.21e-158PREDICTED: transcription factor TCP11
SwissprotQ9SJK75e-44TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A061ETZ01e-157A0A061ETZ0_THECC; Proliferating cell nuclear antigen gene-controlling element binding factor, putative
STRINGEOY078771e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-46TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]