PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG021400t2
Common NameTCM_021400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 355aa    MW: 38691.9 Da    PI: 6.1141
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG021400t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.71.8e-21200251159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s++p       sagC vkk+vers++dp+vv++tYeg+H+h+
  Thecc1EG021400t2 200 LDDGYRWRKYGQKAVKNSPYP-------SAGCGVKKRVERSSDDPTVVVTTYEGQHTHP 251
                       59*******************.......57****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-24185253IPR003657WRKY domain
SuperFamilySSF1182901.11E-20192253IPR003657WRKY domain
PROSITE profilePS5081124.076195253IPR003657WRKY domain
SMARTSM007748.4E-28200252IPR003657WRKY domain
PfamPF031061.2E-16201251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEKKKPEGEK RENSMANLRF SDENPAASGF GGSIFDMAAG ACEGSGGDKW GTLGFMDLLG  60
IHQDFAAPSL FDSFQPPILS SSPPPPPPPS SSELHQEILH ELQLENKQLI QKQQQLQGLP  120
SPASTVPESS EVLNNPATPN SSSISSSSNE AANDEQTKTG DDEEQDQDKT KKQLKPKKKN  180
QKRQREPRFA FMTKSEVDHL DDGYRWRKYG QKAVKNSPYP SAGCGVKKRV ERSSDDPTVV  240
VTTYEGQHTH PCPITPRGSI GISPDSSTFG AASAASFIVP QPQYLHQQQP YIYTSLPPLN  300
ITTATATSSS FINPSFPAFL QERRVAPPSA SSLRDHGLLQ DIVPSQMRNE AKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-201932531077Probable WRKY transcription factor 4
2lex_A1e-201932531077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035842.20.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ44e-56WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A061EWY60.0A0A061EWY6_THECC; WRKY DNA-binding protein 48, putative isoform 2
STRINGEOY067680.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]