PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020127t1
Common NameTCM_020127
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 311aa    MW: 36473 Da    PI: 6.3489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020127t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.14.9e-2531602128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................................kvkaeekewyf 60 
                       ++GfrF Ptdeel+ e L +kv+g+k+ l+++i e +iy++eP+dL+                                   +++ +++e y+
  Thecc1EG020127t1   3 QAGFRFCPTDEELI-EILIQKVSGNKTMLFDFIVERNIYELEPQDLQYlhsflllysyinflitsnanhksffvwflyiwiqNAALNNNERYY 94 
                       58************.88999******9999****************95689********9999776666666666665554322235556666 PP

               NAM  61 Fskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       ++kr+++       +r +  +g Wkat + k++ + +g +vg k+ L+f+     + +++++ ktdW+mhey+l
  Thecc1EG020127t1  95 YCKRETE-------SReVSGRGWWKATSHVKTISA-NGLVVGYKRPLTFHrfrdhERKRKDAIKTDWIMHEYAL 160
                       6666553.......3336789************99.999***********7776556777788*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.6432175IPR003441NAC domain
PfamPF023659.6E-164160IPR003441NAC domain
SuperFamilySSF1019412.62E-27450IPR003441NAC domain
SuperFamilySSF1019412.62E-2781175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MFQAGFRFCP TDEELIEILI QKVSGNKTML FDFIVERNIY ELEPQDLQYL HSFLLLYSYI  60
NFLITSNANH KSFFVWFLYI WIQNAALNNN ERYYYCKRET ESREVSGRGW WKATSHVKTI  120
SANGLVVGYK RPLTFHRFRD HERKRKDAIK TDWIMHEYAL DSIPTDWRLC KIKYKGKERL  180
EEDMENIRNR SCPMSLEAAG GCSSSTNPMQ LDQFAFEEQQ LQPQPSLPPL TLINNDYENY  240
FGSNSNTRFH ISSGEQQQGM AQPITSFDPS WIPLLAAPSH IASQQHNQSA EPREAQFPFP  300
DLWSSWENWH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974574.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBLA0A061EK040.0A0A061EK04_THECC; NAC domain containing protein 94, putative
STRINGEOY050030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.32e-17NAC family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]