PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG020121t1
Common NameTCM_020121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 284aa    MW: 33028.1 Da    PI: 6.3998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG020121t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.33.9e-2921281128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +p+Gf+F Ptdeel+ + L +kv+g+ +  +++i e +iyk+eP+dL+  ++++ +++e y+++kr++ +      + +  +g Wkat + k+
  Thecc1EG020121t1   2 VPMGFKFCPTDEELI-QILIQKVSGNVMAPFDFIVERNIYKLEPQDLQwiQSAALNNNERYYYCKRESDS------REVSGRGWWKATSHVKT 87 
                       599************.7899*******9999****************9533444578899*****98753......347789*********** PP

               NAM  92 vlskkgelvglkktLvfy....kgrapkge.ktdWvmheyrl 128
                       + + +g++vg k+ L+f+    +gr++kg  ktdW+mhey+l
  Thecc1EG020121t1  88 ISA-NGRVVGYKRPLTFHrfrdNGRKRKGAiKTDWIMHEYAL 128
                       *99.999***********7776688877755*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-342143IPR003441NAC domain
PROSITE profilePS5100534.272143IPR003441NAC domain
PfamPF023652.4E-163128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVPMGFKFCP TDEELIQILI QKVSGNVMAP FDFIVERNIY KLEPQDLQWI QSAALNNNER  60
YYYCKRESDS REVSGRGWWK ATSHVKTISA NGRVVGYKRP LTFHRFRDNG RKRKGAIKTD  120
WIMHEYALHS IPTDWRLCKI KYKGKERLEE DMENIRNSSC PMSLEATGGC ISSINPMQVD  180
QFACKEQQPQ PQQFLPPLTF INNEYENYFG SNSNSNSNVR FEISIGEQQQ QQEMEPISSF  240
DPSWMPLMAT PSHIASQQHN QSAETREDQS PFPDLWSSWE NWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-19214615171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007034072.20.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A061EJZ80.0A0A061EJZ8_THECC; NAC domain containing protein 94, putative
STRINGEOY049980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-22NAC domain containing protein 94
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]