PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG018403t1
Common NameTCM_018403
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 571aa    MW: 61751.2 Da    PI: 5.8462
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG018403t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30239298159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Thecc1EG018403t1 239 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGNHNHP 298
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-32224300IPR003657WRKY domain
SuperFamilySSF1182903.01E-27232300IPR003657WRKY domain
PROSITE profilePS5081129.264234300IPR003657WRKY domain
SMARTSM007745.0E-37239299IPR003657WRKY domain
PfamPF031061.2E-26240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEVLLLKMPR ADAAVKQEKT AQSVVCEEAC SPEARKTDMG RKLPKNSELN SSSPSHEGLV  60
DVKEEDELQS AKSEMGEVKE ENERLKMMLE QIQENYKSLQ LRFFEILQQG AIKKSTDSDP  120
SHDDEAPEPE LVSLSLGRSP TNSKKDEKTG SSGKTKEDQE IKAGLTLGLD SKLQLSTEIV  180
SNPGPENSSE EPKEDDAGET WPPSKIQKTT RNGDEEVAQQ GHVKRARVSV RARCDAPTMN  240
DGCQWRKYGQ KISKGNPCPR AYYRCTVAPG CPVRKQVQRC AEDMSILITT YEGNHNHPLP  300
VSATAMASTT SAAASMLLSG SSTSQPGLIS TATSTLTAEL NGLNFNLHDN SRTRQFYLPN  360
STSPSFPTVT LDLTASPSSS SSYFSRFSTD IPTTARFPSA SLNFSSSESN ILPTVWGNGY  420
PAYGAVPYNQ SHTENLNLGK ESQEQFYQTF LEKNHQTAAS QHSLTETLTK AITSDPSFRS  480
VIAAAISSTV SSSAKSAGQT DQTAERFGQN LMQVISQNLL TQNGKGCATS HFTALTSSSS  540
QTGSSLQSSL PISIFNSAST PASDNKEHNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21226300174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974754.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-122WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A061EM500.0A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
STRINGEOY033940.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-99WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]