PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG017228t1
Common NameTCM_017228
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 256aa    MW: 28998.8 Da    PI: 9.3717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG017228t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001795117223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+++++++++L  H +  H
  Thecc1EG017228t1  95 SCSVCSRVYPTSHLLSIHVSEaH 117
                       6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.16792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003555.694117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.057132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAMVVDYQHD LSFPYWTSTR RRFDPDSPFF SSGNIERELL AKQVALDLTE DERNQLEKMV  60
AKDARGVFCP IVGCGARLIS LEDFEDHYNA RHTASCSVCS RVYPTSHLLS IHVSEAHDSF  120
FQAKVARGYA VYECLVEGCG LKFKSYKGRQ QHLVDKHKFP TSFEFFKKAL PSKKQRQKNH  180
RKQAMHKKDE EASSKMEVEN ETMDGLVSAV SKLSTSDSSP STVSFGRHHT RGLTFVPRSV  240
QQEKRADSRL AGAKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178KKQRQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031899.20.0PREDICTED: zinc finger protein 511
TrEMBLA0A061ECW80.0A0A061ECW8_THECC; Zinc ion binding,nucleic acid binding,zinc ion binding
STRINGEOY028250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-117zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]