PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016343t1
Common NameTCM_016343
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 320aa    MW: 36203.2 Da    PI: 4.9207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016343t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30145202258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp++++itY+ eH h
  Thecc1EG016343t1 145 SDIWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRIFIITYTAEHSH 202
                       79*************************998***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-30130205IPR003657WRKY domain
PROSITE profilePS5081132.96139205IPR003657WRKY domain
SuperFamilySSF1182901.31E-25141205IPR003657WRKY domain
SMARTSM007741.0E-34144204IPR003657WRKY domain
PfamPF031067.6E-25146202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSEFYMENWD LRAVVGGSSN GACIPDMENP PFSFDPWSFQ QEDLIMSFPD VFETNPKVLD  60
ELEELYKPFY PEFNPFSTQT IITSSLPVPQ DEEKPESQKK QQPVSQSAVS GTNKDSTQTA  120
KPKRSSRKNQ QNRVVKHVTA DGLSSDIWAW RKYGQKPIKG SPYPRSYYRC SSSKGCLARK  180
QVERSCSDPR IFIITYTAEH SHGHPTRRSS LAGSTRSKSS STSKSLVNNN EPREAAETVL  240
SPTTMKDESV QQDWSMKVEE QMLEDGHGDK ILTPDIMLSD ELDQRLDNFE GLFLDQFPDW  300
SHELWSMNES ATLTGGCWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18132205174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040356.20.0PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A061G6N00.0A0A061G6N0_THECC; WRKY family transcription factor, putative
STRINGEOY248570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-41WRKY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]