PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG016161t1
Common NameTCM_016161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 391aa    MW: 41063 Da    PI: 8.8716
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG016161t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.48.6e-37901982101
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaes 77 
                       ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt                 ++ssa       
  Thecc1EG016161t1  90 TAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTgtvpaiavsvggtlkipTTSSA------- 175
                       6899************************************************************4444444444444333222222....... PP

               TCP  78 ssssasnsssgkaaksaakskksq 101
                        + s++n+s+++++ ++  +kk++
  Thecc1EG016161t1 176 -NTSNNNNSNNNKQIDDGATKKRK 198
                       .22222222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3095198IPR005333Transcription factor, TCP
PROSITE profilePS5136926.00396150IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDPDDDGGTS DLSTSAGEPN TATATTANNK NNDKNCENSA FPVMPLKEEP TETDPDRKTH  60
PSPPVGVVPV AMQIQQMPMQ IPAMPMPVTT AKRSSTKDRH TKVEGRGRRI RIPATCAARI  120
FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TTSSANTSNN  180
NNSNNNKQID DGATKKRKRP ANSEFCDISD GIPFAVSQNQ QQLVTQASGL APVTPQGVVP  240
VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQI WTLSPSLTPV FNVAARPISS  300
FVATTNQVQA VVGNGLSTLA VNTSSTAVGA TVSKKSTMAP SVSSGGSGSG STGGKPQLLR  360
DFSLEIYDKQ ELQFMGRSGN HHQQMQASKQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040099.20.0PREDICTED: transcription factor TCP9
SwissprotO646475e-67TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A061G4120.0A0A061G412_THECC; TCP family transcription factor, putative
STRINGEOY246000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-65TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]