PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG015054t1
Common NameTCM_015054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 350aa    MW: 37489.8 Da    PI: 6.521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG015054t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.12.2e-36901834100
               TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssgkaa 91 
                        k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++          +  +s    + ++
  Thecc1EG015054t1  90 PKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsvngtL----KIPTS----SGKQ 174
                       699***********************************************************99999554221110....11111....1111 PP

               TCP  92 ksaakskks 100
                         + ++k++
  Thecc1EG015054t1 175 DGDLPRKRR 183
                       111112221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3094177IPR005333Transcription factor, TCP
PROSITE profilePS5136927.51294148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MECNQNQTIE EIDESINNNT TIIIIEEQQQ QSNNTTPSFS PSEATVMDPN QPMKEEDLTD  60
TEPREFTNST LVHGLVPVMP AAQTNRSFVP KRPSKDRHTK VEGRGRRIRM PATCAARIFQ  120
LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS VNGTLKIPTS SGKQDGDLPR  180
KRRKRPSNSE FIDVNEHQSS VSSGLAPIAP VTYSSINVNS QGLVPLWPMG TFGVLPAAAG  240
GAPGSNQAQL WAIPATATPF FNVARRPISS FVSAMQPEVQ GSSDGTMGSS GVPSSNSGTT  300
SVAGVSSSSN GNSNSTTQML RDFSLEILDK RELQFLGRPA NHQTPCSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185PRKRRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973008.10.0PREDICTED: transcription factor TCP19
SwissprotQ9LT893e-85TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A061G0X00.0A0A061G0X0_THECC; TCP family transcription factor, putative
STRINGEOY230480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-84TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]