PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014288t1
Common NameTCM_014288
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 370aa    MW: 41030.6 Da    PI: 7.0513
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014288t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.18.1e-31491883134
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                       g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WLl + k+ i++l+ ++ ++      +++ +  +snss++      
  Thecc1EG014288t1  49 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLLDATKTDIDKLPPLQMPPGFGQfHQQMLVPHESNSSQSslapff 141
                       79*************************************************************888884444344444444433333556778 PP

               TCP  89 .kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                        +++ + + +++++  a+  +++++  rak+++ +re+t+   + k+
  Thecc1EG014288t1 142 eANSMFMKDGEDPSIAAKRYWDMDAALRAKSKEVERESTTAAEKGKW 188
                       6666666688888888999999999*********9998877666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2750185IPR005333Transcription factor, TCP
PROSITE profilePS5136928.7950108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MISSPREKDF QAKQEGETND GKFSKGSSSS RQWSGFRNPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRIRL SVPTAIQLYD LQERLGLSQP SKVIDWLLDA TKTDIDKLPP LQMPPGFGQF  120
HQQMLVPHES NSSQSSLAPF FEANSMFMKD GEDPSIAAKR YWDMDAALRA KSKEVEREST  180
TAAEKGKWIK VTEQHENQDG IGDYSGQASS QKHFPVANHS SLPGLSNTAM PFNSYYHWEP  240
SSLSLSQFGN HGFLSQTENF LHGNTTVPLP SSLALPSAHA PQLFFCPPST MPSLFPSYPP  300
YVTTTPGDSS DSRQINHFQL LSSSSQHILP NSVTMSPSMK PFSLNVNAGL RTHTQNDDES  360
HADEDNIDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1755109155Putative transcription factor PCF6
5zkt_B1e-1755109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2822582e-78GU282258.1 Populus balsamifera isolate RNA13 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822592e-78GU282259.1 Populus balsamifera isolate RNA13 haplotype B putative TCP family transcription factor gene, partial sequence.
GenBankGU2822602e-78GU282260.1 Populus balsamifera isolate INU03 haplotype A putative TCP family transcription factor gene, partial sequence.
GenBankGU2822622e-78GU282262.1 Populus balsamifera isolate NWL07 haplotype A putative TCP family transcription factor gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037593.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A061G4Y70.0A0A061G4Y7_THECC; Teosinte branched 1, putative
STRINGEOY220940.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-60TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]