PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG014051t1
Common NameTCM_014051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 375aa    MW: 42143.8 Da    PI: 6.4496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG014051t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.7e-24953145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tg+
  Thecc1EG014051t1  9 KRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSPTGR 53
                      689****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.343161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-31160IPR002100Transcription factor, MADS-box
CDDcd002661.08E-27282No hitNo description
SuperFamilySSF554552.09E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-201156IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE  60
HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFIGAT SQSVEEMNNE  120
VSMLQAQLTE VHKRLSYWSN PDKIDNIEHL RQMEDILRES IERIRMHKEN FGKHHLMPLE  180
CTSQFQNGIP LPMMIGGVQE AQPVTWLPNN DNQHMLLHNE PSFLPHRDAE CSADGSFAGY  240
SGFFGSGKQI EIGSSGQVDN VVQESSALNE LGSNACLSLQ LGEQYLYPPY SASNLQDDEK  300
LKPEMEVNLP GNPAVYQVVS NFEIPRPMYN GGPQARISSS GPCGIMMFDG NSYHQQTKST  360
FMNQTPPSGE LHNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15192190Myocyte-specific enhancer factor 2B
1tqe_Q1e-15192190Myocyte-specific enhancer factor 2B
1tqe_R1e-15192190Myocyte-specific enhancer factor 2B
1tqe_S1e-15192190Myocyte-specific enhancer factor 2B
6c9l_A1e-15192190Myocyte-specific enhancer factor 2B
6c9l_B1e-15192190Myocyte-specific enhancer factor 2B
6c9l_C1e-15192190Myocyte-specific enhancer factor 2B
6c9l_D1e-15192190Myocyte-specific enhancer factor 2B
6c9l_E1e-15192190Myocyte-specific enhancer factor 2B
6c9l_F1e-15192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037391.20.0PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_017973210.10.0PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_017973211.10.0PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I01e-121AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A061FWH40.0A0A061FWH4_THECC; AGAMOUS-like 65, putative isoform 1
STRINGEOY218900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-110AGAMOUS-like 65
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]