PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG012338t1
Common NameTCM_012338
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 253aa    MW: 27075.6 Da    PI: 7.8273
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG012338t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.2e-284107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +Pv+G+vg++++++++l+
  Thecc1EG012338t1   4 SCNGCRVLRKGCTESCSIRPCLqwiatAQSQANATLFLAKFYGRAGLINLINAGPENLRPGIFKSLLYEACGRIVNPVHGSVGLMWSGSWHLC 96 
                       6*********************9999888999************************************************************* PP

            DUF260  89 qlkaelallke 99 
                       +++++++l+++
  Thecc1EG012338t1  97 EAAVDAVLRGS 107
                       ***99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5583109IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCTESCS IRPCLQWIAT AQSQANATLF LAKFYGRAGL INLINAGPEN  60
LRPGIFKSLL YEACGRIVNP VHGSVGLMWS GSWHLCEAAV DAVLRGSPIN KVSSELSDSS  120
PHLKSSCDIR HVSKEKNSDD GLRKIKSRGR FKRSAWKPKA QVEKEVCHES VSHESGLSQR  180
RSPGGDGAEG DTVSVETVEA SLAKADELAD GSDLELDLTL GFEPSPRKRA NSINGCDDAT  240
CGVQLDLGQG SC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036523.10.0LOB domain-containing protein 41, putative
SwissprotQ9M8862e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A061G1V50.0A0A061G1V5_THECC; LOB domain-containing protein 41, putative
STRINGVIT_17s0000g03720.t016e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-74LOB domain-containing protein 41
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]