PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG009888t1
Common NameTCM_009888
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 237aa    MW: 26115.9 Da    PI: 8.6736
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG009888t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-314107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++  +
  Thecc1EG009888t1   4 SCNGCRVLRKGCSENCIIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIEAGPQHLRPAIFRSLLYEACGRVVNPVYGSVGMLWSGNWAQC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q++++++l ++
  Thecc1EG009888t1  97 QAAVDAVLKGS 107
                       ***99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8323109IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKMSCNGCRV LRKGCSENCI IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIEAGPQH  60
LRPAIFRSLL YEACGRVVNP VYGSVGMLWS GNWAQCQAAV DAVLKGSPIT HTSSSDSLAL  120
QPISPLKTYD IRHVSKEPRP ADIDKLKTRT RFKRSVNRSK RQVDSPSYDS WMSQLGNDDS  180
KDDESMFSVE SVEGSLVNQM KKVPALKFTS QIEESTDDVG LELTLGLVPT ALQPHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5855619e-52JX585561.1 Gossypium hirsutum clone NBRI_GE19169 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044347.11e-177LOB domain-containing protein 42
SwissprotQ9CA303e-88LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A061ED631e-177A0A061ED63_THECC; LOB domain-containing protein 42
STRINGPOPTR_0008s11950.11e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-89LOB domain-containing protein 42
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]