PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG008973t1
Common NameTCM_008973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 79aa    MW: 8995.45 Da    PI: 9.8764
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG008973t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151158349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                      i n+  r v++ kRr g+ KK +ELS+LC+++++ ii++++  +l  +
  Thecc1EG008973t1 11 ITNDNARRVSLKKRRLGLSKKMNELSTLCGVNACAIIYGPNEiELTVW 58
                      89*************************************986355555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.544151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-21277IPR002100Transcription factor, MADS-box
CDDcd002669.44E-27278No hitNo description
PRINTSPR004046.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MTRKKVKLEW ITNDNARRVS LKKRRLGLSK KMNELSTLCG VNACAIIYGP NEIELTVWPS  60
HDVVQQQLTH FQSLSELE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLEWITNDNARRVSLKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274535.14e-37LOW QUALITY PROTEIN: uncharacterized protein LOC110409470
RefseqXP_021296849.12e-38agamous-like MADS-box protein AGL8
SwissprotQ9FJK31e-18AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A061E5M46e-51A0A061E5M4_THECC; Uncharacterized protein
STRINGEOX999379e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-19AGAMOUS-like 80
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]