PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007543t1
Common NameTCM_007543
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 190aa    MW: 21785.3 Da    PI: 4.7919
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007543t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.91.6e-3981261128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ k+ ae ++wyf+s+r         +nr t++gyWk  g d++v+
  Thecc1EG007543t1   8 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELNGKALAEGNQWYFYSRRT--------QNRNTSNGYWKPMGIDEPVV 91 
                       79*************************999.99**************977778899******984........58999*************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++++vg+kk + fy g+ p g kt+W+m+eyrl
  Thecc1EG007543t1  92 NSSSKKVGMKKYFLFYIGEGPAGIKTNWIMQEYRL 126
                       *********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-495157IPR003441NAC domain
PROSITE profilePS5100546.7478158IPR003441NAC domain
PfamPF023653.0E-239126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLQRKA ALLPCHPDVI PDLDLYPYDP WELNGKALAE  60
GNQWYFYSRR TQNRNTSNGY WKPMGIDEPV VNSSSKKVGM KKYFLFYIGE GPAGIKTNWI  120
MQEYRLSDCD SSSSRSSKRR AHSKIDHSKW VVCRVYERSS DDDDDGTELS CLDEVFLSLD  180
DLDEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-43416016170NAC domain-containing protein 19
3swm_B1e-43416016170NAC domain-containing protein 19
3swm_C1e-43416016170NAC domain-containing protein 19
3swm_D1e-43416016170NAC domain-containing protein 19
3swp_A1e-43416016170NAC domain-containing protein 19
3swp_B1e-43416016170NAC domain-containing protein 19
3swp_C1e-43416016170NAC domain-containing protein 19
3swp_D1e-43416016170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043034.11e-140PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK61e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A061E1M11e-138A0A061E1M1_THECC; NAC domain protein, IPR003441 isoform 1
STRINGGorai.005G217400.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-85xylem NAC domain 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]