PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007211t1
Common NameTCM_007211
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 264aa    MW: 28478.6 Da    PI: 8.003
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007211t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.45.3e-2951152197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++++ +r+++++sl++eA  ra +Pv+Gavg++++++++++
  Thecc1EG007211t1  51 SCNGCRVLRKGCSENCMLRQSLqcidnPQAQAHATVFVAKFFGRAGLMSFLSSVSKPQRPALFHSLMFEAVGRAVNPVSGAVGLLWTGNWNVC 143
                       6**********************99******************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q++++++l+
  Thecc1EG007211t1 144 QSAVQTVLR 152
                       **9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.75850156IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-2451149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHSLSLPLYI CLCALLIFLS FNHSLPTNPL DARNPISSPS FFSFSCAETM SCNGCRVLRK  60
GCSENCMLRQ SLQCIDNPQA QAHATVFVAK FFGRAGLMSF LSSVSKPQRP ALFHSLMFEA  120
VGRAVNPVSG AVGLLWTGNW NVCQSAVQTV LRGGTLQPLP KFSGGVSGSD FEDVSETVGG  180
TGLQCFRTRE EDFVKRKGFG DVVKCEANDL DLCLMIGDDR AGKRRREATP SEESEMTTLG  240
SRSDAGDGSS SKGDARKLLR LFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042619.10.0LOB domain-containing protein 38, putative
TrEMBLA0A061E0E60.0A0A061E0E6_THECC; LOB domain-containing protein 38, putative
STRINGPGSC0003DMT4000661652e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-60LOB domain-containing protein 38
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]