PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006249t1
Common NameTCM_006249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 550aa    MW: 57834.2 Da    PI: 7.5146
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006249t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.61.8e-411692963115
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                       + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++      
  Thecc1EG006249t1 169 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksap 261
                       5699****************************************************************9998888888888855555555556 PP

               TCP  89 .........................kaaksaakskksqksaasalnlakesr 115
                                                +                  l ++++++
  Thecc1EG006249t1 262 hsfhgalalashhhhhpyeegfaqsA-----------------LLGFHHQQQ 296
                       66666666544444444444443220.................222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-41173336IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496174228IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MELTDLQSNK QSNNSNSNNN NSSNNSTEPH HQSLHHHLHH HHHHHLQHQK QSPSPQLVVP  60
FDGTRSSGPS AGNPFNMGSI SHPHHHHHLL LHPASSTTTT TTTPPLTSSS SSSSSASTTT  120
TNPPQLVDAS LAIATRSTSV NVDSTKKNQP NLPLSSTTTT TTTTVANPPV KRSTKDRHTK  180
VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST  240
LNVSLRSSGS TLSAPPSKSA PHSFHGALAL ASHHHHHPYE EGFAQSALLG FHHQQQQQQQ  300
QQQLLTADQI AEALPGAAGG DSGNSSENYM RKRFREDLFK DDNQQQGESG SGGGGGSGDG  360
SPIKAFKSGL GQLPKPQQDA GSSGLLRPSN ILPATAMWAV APAPSSGAGS TFWMLPVTAG  420
AGGPSVATGA SGAGPSEPQM WPFGTPGPAS GNTLQAPLHF VPRFNLPGSV EFQGGRPSPL  480
QLGSMLMQQQ PSQHLGLGMS ESNLGMLAAL NAYSRGGSNI NSEQNNPLEH HQHQPQGTDS  540
GDEDPNNSQ*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274911e-100HQ527491.1 Gossypium herbaceum clone NBRI_C_7085 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041329.20.0PREDICTED: transcription factor TCP8
SwissprotQ9C5182e-90TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A061DWY90.0A0A061DWY9_THECC; TCP family transcription factor
STRINGEOX971600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-79TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]