PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005497t1
Common NameTCM_005497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 204aa    MW: 22253.3 Da    PI: 8.373
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005497t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18.1e-409108199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+a
  Thecc1EG005497t1   9 PCGACKFLRRKCIKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKMLLRIPAHRRVDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVVNLQA 101
                       7***********************9989***************************************************************** PP

            DUF260  93 elallke 99 
                       ela+++ 
  Thecc1EG005497t1 102 ELAYIQG 108
                       **99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2638110IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-389107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSANNGGGPC GACKFLRRKC IKGCIFAPYF DSDQGTAHFA AVHKVFGASN ASKMLLRIPA  60
HRRVDAVVTL CYEALARVRD PVYGCVGHIF TLQQQVVNLQ AELAYIQGRL STLQRLPLLP  120
PSQAQYTSPT SLHSSSEVGS DLVSSSNMSM SFDRPQPQLA SVELTSFPNP FDQEPENEEL  180
QALAREFVSR YLPGVRFRPS TSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052037.11e-150LOB domain-containing protein 31
SwissprotO813223e-75LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A061DTV81e-150A0A061DTV8_THECC; LOB domain-containing protein 31
STRINGPOPTR_0014s06580.19e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-71LOB domain-containing protein 31
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]