PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005496t1
Common NameTCM_005496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 293aa    MW: 30607.6 Da    PI: 7.5617
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005496t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.15.2e-3726112186
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                       +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq
  Thecc1EG005496t1  26 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQ 112
                       7***********************9989*********************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.39225127IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3626112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSANPSSSGG SVGGGAGSCS SGGGGPCGAC KFLRRKCVPG CIFAPYFDSE QGAAHFAAVH  60
KVFGASNVSK LLLHIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQEAVPDIDH  120
RKGVSKHPYP FHTSSEGLDG IRNGTYGKEE KMYGVHAASG AGIKEMVVNL QAELSYLQAH  180
LATLELPSPP PPPPPSTTLM APPPLSISDL PSASSVPATY DLSSLFDPVV QHSWGMQQRQ  240
IDPRQFGGSG SSSLTGSGDL QALARELLHR QGSPQHGCLP CTDASPSQSL SK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052036.10.0LOB domain-containing protein 18, putative
SwissprotO221313e-64LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A061E1T50.0A0A061E1T5_THECC; LOB domain-containing protein 18, putative
STRINGVIT_15s0048g00830.t011e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.17e-58LOB domain-containing protein 18
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]