PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005179t1
Common NameTCM_005179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 353aa    MW: 39594.2 Da    PI: 5.1618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005179t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.5e-29120181159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK++ gs+fpr+YYrCt++   gC ++k+v+rs+edp+++e++Y+g+H+++
  Thecc1EG005179t1 120 LDDGYCWRKYGQKDILGSNFPRGYYRCTHRhsqGCLATKQVQRSDEDPTIFEVKYRGRHTCN 181
                       59***************************98999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28111182IPR003657WRKY domain
PROSITE profilePS5081123.353115178IPR003657WRKY domain
SuperFamilySSF1182909.68E-26118182IPR003657WRKY domain
SMARTSM007743.0E-41120182IPR003657WRKY domain
PfamPF031061.0E-25121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MERTMDWEQK TLLNELTQGK QLTNLLRQHL HPSSSPETRQ DLLEKILCSY EKALSMLNWS  60
GFVVETKPTS STLESPASIA NSSLGSEGSD KKDVSKKRKT SSGWTEQLRV CSGTSLEGPL  120
DDGYCWRKYG QKDILGSNFP RGYYRCTHRH SQGCLATKQV QRSDEDPTIF EVKYRGRHTC  180
NQVSHFAVTS VPVTREMSKG QGNHSRKRQQ LEEKQKQSQE MFMSLGAGLM VKTEELDTRE  240
DIFPSFPFPV ESEEVENSMF VKSLMENDIM GNLSPTFMSP ATSESNYFSV SPCHMGSFGF  300
AQNVQTSESD LTEIISAPTS VTNSPIGDLD ISSLDKLEFD PSFPFDNSEF FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20120180868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051596.20.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A061E0I10.0A0A061E0I1_THECC; WRKY DNA-binding protein 46, putative
STRINGEOX957530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-58WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]