PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005009t1
Common NameTCM_005009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 463aa    MW: 52277.9 Da    PI: 4.5329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005009t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.69.9e-40441743128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        G+rFhPtd el+++yLk+k  g++  + ++i+ev di+ +ePw+Lp  ++++++++ wyfF + + ky++++r +r+t++gyWk tg+ ++v
  Thecc1EG005009t1  44 TGYRFHPTDFELLHYYLKNKNLGRDALV-QAIAEVeDICGLEPWELPghSNIHSGDQVWYFFYRPNYKYRNSTRIKRTTNEGYWKRTGNPRKV 135
                       7************************877.7799998***********6448888999************************************ PP

               NAM  93 lsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       +++  ++++g k+tLvfykg  ++ + +kt W++hey+l
  Thecc1EG005009t1 136 MARdLETEIGEKRTLVFYKGrvSDDNKNKTGWIIHEYEL 174
                       **955667**********8843566788*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.31742192IPR003441NAC domain
SuperFamilySSF1019415.49E-4143192IPR003441NAC domain
PfamPF023651.2E-2144174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MRNRKGYQII QPITNEERFS NYYCYYLFWV AVGYYLWKKI LSITGYRFHP TDFELLHYYL  60
KNKNLGRDAL VQAIAEVEDI CGLEPWELPG HSNIHSGDQV WYFFYRPNYK YRNSTRIKRT  120
TNEGYWKRTG NPRKVMARDL ETEIGEKRTL VFYKGRVSDD NKNKTGWIIH EYELTATLPN  180
QTTFILCKLK KKYGKAEVPC IEEGQSSHDL PPNLGNYIAN NAIPAEAASC FTDQSDPNEL  240
LAQLESFNYH DGLEYQSTEL WDSYLVGDVP TNEGSNLTFN FGNHVAENAI PNDQLKPSDE  300
APIQQEVPQD QSSTNEQDNN FGNLVPADET SNQHKLVVEN DGSTMPSTIQ NPIVAESGQM  360
DLSNLGGAST DELFAELDAL PEVQGNSIGQ GFDDWVSLAD IGNYLNIPNG SDNQSCTNEE  420
KNPTATNGGC SLPIAGMMES PYPINPSRKR LRTDCEGFGW DK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-224519720170NO APICAL MERISTEM PROTEIN
1ut4_B2e-224519720170NO APICAL MERISTEM PROTEIN
1ut7_A2e-224519720170NO APICAL MERISTEM PROTEIN
1ut7_B2e-224519720170NO APICAL MERISTEM PROTEIN
3swm_A2e-224519723173NAC domain-containing protein 19
3swm_B2e-224519723173NAC domain-containing protein 19
3swm_C2e-224519723173NAC domain-containing protein 19
3swm_D2e-224519723173NAC domain-containing protein 19
3swp_A2e-224519723173NAC domain-containing protein 19
3swp_B2e-224519723173NAC domain-containing protein 19
3swp_C2e-224519723173NAC domain-containing protein 19
3swp_D2e-224519723173NAC domain-containing protein 19
4dul_A2e-224519720170NAC domain-containing protein 19
4dul_B2e-224519720170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973800.10.0PREDICTED: uncharacterized protein LOC18613866
TrEMBLA0A061DRU70.0A0A061DRU7_THECC; Nam protein 1, putative
STRINGEOX955340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1973146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.15e-34NAC domain containing protein 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]