PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005008t2
Common NameTCM_005008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 405aa    MW: 46627.7 Da    PI: 4.6739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005008t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.88.6e-36812033128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rFhP+d+el+++yL +kv +++  + +vi ev  d++++eP++Lp     ++++k wy F++r+++    kr +r+tk g+Wk tg++++
  Thecc1EG005008t2  81 VGYRFHPSDKELIDHYLWNKVLDRDSAV-QVIGEVagDLCDYEPERLPgFsIRRSNDKVWYLFCRRNHN----KRVKRTTKLGFWKLTGRNRH 168
                       7************************888.899999999**********64333457789******9885....599***************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++  +  +g+kktLvfy+gr pkg+ t Wv+hey+l
  Thecc1EG005008t2 169 IKA--NVGIGIKKTLVFYEGRVPKGKWTPWVIHEYNL 203
                       *99..778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3977220IPR003441NAC domain
PROSITE profilePS5100540.37479220IPR003441NAC domain
PfamPF023656.5E-2281203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
NFWRKEFSFL LFKSSFFSPN FNFRGATPLS LVLTEEKYPL FIAGISVWFW FLSSIVFLLS  60
CPFGISSMSD EMSRCSCNDI VGYRFHPSDK ELIDHYLWNK VLDRDSAVQV IGEVAGDLCD  120
YEPERLPGFS IRRSNDKVWY LFCRRNHNKR VKRTTKLGFW KLTGRNRHIK ANVGIGIKKT  180
LVFYEGRVPK GKWTPWVIHE YNLPDTLPNQ GYFLCKLKKK DDEKASIASG EEGQPSNVAD  240
DKISDNSMEI NIEELLAQLE DTNDSNKVGD EVVSLQKPDF DGVQNQSSTN EQDDELYLVS  300
STQQSQIQEE HVPSYNDSTN FCGVDGNFHK IQNQSSTNEQ DDEFYHVSPT RQSQICEEHV  360
SSYNNSIIFC GFNVNFHEVQ NQSSTKEEDD EFWKNIFIDD DDDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-208222020165NO APICAL MERISTEM PROTEIN
1ut4_B1e-208222020165NO APICAL MERISTEM PROTEIN
1ut7_A1e-208222020165NO APICAL MERISTEM PROTEIN
1ut7_B1e-208222020165NO APICAL MERISTEM PROTEIN
3swm_A1e-208222023168NAC domain-containing protein 19
3swm_B1e-208222023168NAC domain-containing protein 19
3swm_C1e-208222023168NAC domain-containing protein 19
3swm_D1e-208222023168NAC domain-containing protein 19
3swp_A1e-208222023168NAC domain-containing protein 19
3swp_B1e-208222023168NAC domain-containing protein 19
3swp_C1e-208222023168NAC domain-containing protein 19
3swp_D1e-208222023168NAC domain-containing protein 19
4dul_A1e-208222020165NAC domain-containing protein 19
4dul_B1e-208222020165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973800.10.0PREDICTED: uncharacterized protein LOC18613866
TrEMBLA0A061DZT00.0A0A061DZT0_THECC; NAC domain containing 69-like protein isoform 2 (Fragment)
STRINGEOX955330.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2081746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-40NAC domain containing protein 69
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]