PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005008t1
Common NameTCM_005008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 339aa    MW: 38960.8 Da    PI: 4.5973
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005008t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.55.4e-36141363128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rFhP+d+el+++yL +kv +++  + +vi ev  d++++eP++Lp     ++++k wy F++r+++    kr +r+tk g+Wk tg++++
  Thecc1EG005008t1  14 VGYRFHPSDKELIDHYLWNKVLDRDSAV-QVIGEVagDLCDYEPERLPgFsIRRSNDKVWYLFCRRNHN----KRVKRTTKLGFWKLTGRNRH 101
                       7************************888.899999999**********64333457789******9885....599***************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++  +  +g+kktLvfy+gr pkg+ t Wv+hey+l
  Thecc1EG005008t1 102 IKA--NVGIGIKKTLVFYEGRVPKGKWTPWVIHEYNL 136
                       *99..778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3912154IPR003441NAC domain
PROSITE profilePS5100540.512154IPR003441NAC domain
PfamPF023654.5E-2214136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSDEMSRCSC NDIVGYRFHP SDKELIDHYL WNKVLDRDSA VQVIGEVAGD LCDYEPERLP  60
GFSIRRSNDK VWYLFCRRNH NKRVKRTTKL GFWKLTGRNR HIKANVGIGI KKTLVFYEGR  120
VPKGKWTPWV IHEYNLPDTL PNQKGYFLCK LKKKDDEKAS IASGEEGQPS NVADDKISDN  180
SMEINIEELL AQLEDTNDSN KVGDEVVSLQ KPDFDGVQNQ SSTNEQDDEL YLVSSTQQSQ  240
IQEEHVPSYN DSTNFCGVDG NFHKIQNQSS TNEQDDEFYH VSPTRQSQIC EEHVSSYNNS  300
IIFCGFNVNF HEVQNQSSTK EEDDEFWKNI FIDDDDDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-2121549165NO APICAL MERISTEM PROTEIN
1ut4_B7e-2121549165NO APICAL MERISTEM PROTEIN
1ut7_A7e-2121549165NO APICAL MERISTEM PROTEIN
1ut7_B7e-2121549165NO APICAL MERISTEM PROTEIN
3swm_A8e-21215412168NAC domain-containing protein 19
3swm_B8e-21215412168NAC domain-containing protein 19
3swm_C8e-21215412168NAC domain-containing protein 19
3swm_D8e-21215412168NAC domain-containing protein 19
3swp_A8e-21215412168NAC domain-containing protein 19
3swp_B8e-21215412168NAC domain-containing protein 19
3swp_C8e-21215412168NAC domain-containing protein 19
3swp_D8e-21215412168NAC domain-containing protein 19
4dul_A7e-2121549165NAC domain-containing protein 19
4dul_B7e-2121549165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973800.10.0PREDICTED: uncharacterized protein LOC18613866
TrEMBLA0A061DT070.0A0A061DT07_THECC; NAC domain containing 69-like protein isoform 1
STRINGEOX955330.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.15e-43NAC domain containing protein 69
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]