PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004106t1
Common NameTCM_004106
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 205aa    MW: 22322.5 Da    PI: 7.9406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004106t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.6e-40131141101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a
  Thecc1EG004106t1  13 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQA 105
                       7*************************99***************************************************************** PP

            DUF260  93 elallkeel 101
                       +l ++k++l
  Thecc1EG004106t1 106 QLMQVKAQL 114
                       ***999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.06512114IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3813111IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MASSGSATAT GSPCGACKFL RRKCASDCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL  60
HIPAHDRCEA VVTIAYEAQA RIRDPVYGCV AHIFALQQQV ACLQAQLMQV KAQLAQNAMN  120
SHNIESQWQG NLSGLPSIPT YPSYMNPISP QSSLESVELN SADSMNMQEI QSRDEFSFQG  180
YPKKRPCNSD LGELQALALR MMRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050346.11e-152Lateral organ boundaries-domain 16
SwissprotQ9SLB75e-84LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A061DWW21e-152A0A061DWW2_THECC; Lateral organ boundaries-domain 16
STRINGPOPTR_0005s24320.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.14e-69lateral organ boundaries-domain 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]