PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_C57224E6E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 265aa    MW: 30602 Da    PI: 10.3874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_C57224E6E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15170260199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +t+s+v+   +l lpk+f++++  k  ++  +tl de+g + + ++  rk +    l++ Wk F+  ++L +gD +vF++++++
  Traes_7DS_C57224E6E.1 170 FVKPMTQSHVTGGFWLGLPKQFCTKYLPK--RDEWITLVDEKGTESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQT 251
                            89************************433..4568***************444444....9999*******************88766 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v+++r+
  Traes_7DS_C57224E6E.1 252 RF--KVHIIRQ 260
                            66..9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-23163261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-20163261IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-23168259No hitNo description
PfamPF023628.8E-14170260IPR003340B3 DNA binding domain
PROSITE profilePS508639.671170261IPR003340B3 DNA binding domain
SMARTSM010192.5E-16170261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
FIGRRSFPFW PPPPHSHLLP PSAPPQRERE EIREKRWPER SRTRSSAGGR WRRTGASSTS  60
STCTTSPPPS GTPPSPPGPR RSNLRSGSLE XXXXXXXXXX RVASLPEQPN YRFEDTYADI  120
EKKIRWGGSR THSTRTDLID RVYATEEART YATDMAEELQ AKLDPRHPSF VKPMTQSHVT  180
GGFWLGLPKQ FCTKYLPKRD EWITLVDEKG TESDSYYLAR KWGLSAQWKA FAINHKLVDG  240
DCLVFERIHQ TRFKVHIIRQ SSYYK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572001e-161AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185095.11e-121B3 domain-containing protein Os06g0194400-like isoform X1
SwissprotQ69V364e-63Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6TJB31e-120A0A3B6TJB3_WHEAT; Uncharacterized protein
TrEMBLA0A453QI081e-120A0A453QI08_AEGTS; Uncharacterized protein
STRINGTraes_7DS_C57224E6E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-50B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]