PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_A234A13E1.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 233aa    MW: 26860.8 Da    PI: 10.452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_A234A13E1.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-17137227199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +t+s+v+   +l lp +f+++h  k  ++  ltl+de+g + e  +   k++    l++GW++F+ +++L +gD +vF+l++r+
  Traes_7DS_A234A13E1.2 137 FVKPMTQSHVTGGFWLGLPLPFCRKHLPK--RDERLTLKDEQGVESETLYLALKNG----LSAGWRGFAIQHNLVDGDCLVFELINRT 218
                            89************************433..4557********9999999677776....9************************988 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_7DS_A234A13E1.2 219 TF--KVYIIRQ 227
                            88..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-24131228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-20132228IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-26135226No hitNo description
PROSITE profilePS5086311.293137228IPR003340B3 DNA binding domain
SMARTSM010193.2E-21137228IPR003340B3 DNA binding domain
PfamPF023623.6E-15137227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPTKSLKR KRVPREAGED  60
TPIRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGRRTTTS TRSDLINRVY ATDKAREYAT  120
TMAEELQAKL GSGYPSFVKP MTQSHVTGGF WLGLPLPFCR KHLPKRDERL TLKDEQGVES  180
ETLYLALKNG LSAGWRGFAI QHNLVDGDCL VFELINRTTF KVYIIRQSSY YER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160679.11e-173B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-104Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6TND61e-172A0A3B6TND6_WHEAT; Uncharacterized protein
TrEMBLN1R2B21e-172N1R2B2_AEGTA; B3 domain-containing protein
STRINGEMT131061e-172(Aegilops tauschii)
STRINGTraes_7DS_A234A13E1.21e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-64B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]