PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_68E3ACF8E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 480aa    MW: 51290 Da    PI: 4.5345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_68E3ACF8E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11330375555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  Traes_7DS_68E3ACF8E.1 330 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 375
                            99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16323385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12323379No hitNo description
PROSITE profilePS5088816.901325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDYSNGSFFP SWPGNSASEN YSFVDGSVES YAEEGSMPPT GYFRARSNQN LTFDEHEQNP  60
AMLANGCLPY NTQTDLLSGE ILSEDKHSNS LMELPQLQNN GSLQSNLIPP GTLQCTSTPG  120
TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVHAVS SASTLCSTFQ NVPSYMEPVS  180
LEAFSFQGIQ NAAMFNNTSH SNGNLSVFDE ATMASLHDSK EFLSGSISSF GTAEQSQLAG  240
SGLKAEQQEQ NAMCNIPLPF ASGSQMAVSE AQGAMIPSKI SSTMHNNKSE YPVPISHSAD  300
AQNKANSANG NSASAKPRAR ARRGQATDPH SIAERLRREK ISERMKNLQD LVPNSNKADK  360
SSMLDEIIDY VKFLQLQVKV LSMSRLGAPG AVLPLLAESQ TEGRSNSPLS SPTASQGLLD  420
AAGPEDSLVF EQEVIKLMET SITNAMQYLQ NKGLCLMPIA LASAISNQKG TSAAAIPPER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9793920.0DQ979392.1 Triticum aestivum cultivar PH85-16 PTF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227911.10.0PREDICTED: uncharacterized protein LOC100841109
TrEMBLW5I7Y60.0W5I7Y6_WHEAT; Uncharacterized protein
STRINGMLOC_59503.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-47LJRHL1-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]