PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_F43F7A9A3.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 313aa    MW: 35329.5 Da    PI: 6.9776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_F43F7A9A3.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09184224954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Traes_7DL_F43F7A9A3.4 184 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 224
                            699*****************87.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15180235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-14181234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-7185224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-6198229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDNMTHNSSS SSSWDLDMSL GSHHHPLLFD HPTPTPPAPP PPPLSFHLHP PPPPPPHQHH  60
QHHQQHQLAI DPSPSSSLFP PPHHHPHHLH HLDLAVDPHR HHHDYQREQH PDEMQQRPPP  120
AMEEGSQQLH HQDAVDEAEE ELGAMKEMMY RIAAMQPVDI DPATIKKPRR RNVRISEDPQ  180
SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY IKFLKRQVQD LQHQPAPXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXGAGSL IDWAGLTRQV DIHAPTSSSS SSSMGGALGF  300
GFSTGGQSSH GMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-104CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149641e-104AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0045841e-104AP004584.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0007D08.
GenBankAP0044621e-104AP004462.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0450B04.
GenBankAK2410051e-104AK241005.1 Oryza sativa Japonica Group cDNA, clone: J065053F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972449.15e-79PREDICTED: transcription factor HEC1-like
TrEMBLW5I4H90.0W5I4H9_WHEAT; Uncharacterized protein
STRINGSi015197m2e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-37bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]