PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_CA3975AFD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 55aa    MW: 6216.48 Da    PI: 11.1351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_CA3975AFD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-057421555
                           HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r+++ + +L+ ++P        +++  ++L +Av+Y+ksL+
  Traes_7DL_CA3975AFD.1  7 RMKKMMKTLKGIIPGG-----DRMDTPAVLDEAVRYLKSLK 42
                           78899999*****994.....59****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.385141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0051147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-9549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
GERKKERMKK MMKTLKGIIP GGDRMDTPAV LDEAVRYLKS LKVEVKKLGV RGSRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961033e-70FP096103.1 Phyllostachys edulis cDNA clone: bphyem207a01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629278.12e-28PREDICTED: transcription factor bHLH144
RefseqXP_015693574.11e-28PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX93e-11BH144_ARATH; Transcription factor bHLH144
TrEMBLM0VZF28e-30M0VZF2_HORVD; Uncharacterized protein
TrEMBLT1MYP05e-29T1MYP0_TRIUA; Uncharacterized protein
TrEMBLW5I3956e-31W5I395_WHEAT; Uncharacterized protein
STRINGMLOC_38887.12e-29(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP208333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-12bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]