PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_88B60203A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 217aa    MW: 24337.1 Da    PI: 8.4299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_88B60203A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.4e-105098354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  Traes_7DL_88B60203A.1 50 TSKACREKVRRDKLNDRFLELGTTLDPG---KPVKADKAAILSDATRMVTQL 98
                           67889**********************9...99**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1246115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.14798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-748103No hitNo description
PfamPF000104.5E-75098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1250121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-853104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
LLYYLLVPLS YFPSLFFYSA EVGSYVNNSD VPKDSGSNKR LRSEPCGRPT SKACREKVRR  60
DKLNDRFLEL GTTLDPGKPV KADKAAILSD ATRMVTQLRA EAQQLKDTNG SLEDKIKELK  120
AEKDELRDEK QKLKLEKETL EHQMKLLTAT PAYMPHPTMM PSPFAQAPMA PFHAQGQALG  180
QKLMMPFVGY PGYPMWQLMP PSEVDTSKDS EACPPVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3699770.0GU369977.1 Triticum aestivum helix-loop-helix-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573355.11e-129PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-74ILR3_ARATH; Transcription factor ILR3
TrEMBLW5I1961e-160W5I196_WHEAT; Uncharacterized protein
STRINGMLOC_6315.11e-138(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-61bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]