PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_7B0ABD21E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 238aa    MW: 25643.1 Da    PI: 10.3265
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_7B0ABD21E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18109158155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Traes_7DL_7B0ABD21E.2 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 158
                            78*******************......55************************998 PP

2AP223.11.8e-07201237142
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42 
                            s+++GV+ +k  g+W+A+I         +k ++lg ++t e+ 
  Traes_7DL_7B0ABD21E.2 201 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDT-EMD 237
                            789*******.7******77733....25**********.875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-16109166IPR016177DNA-binding domain
PfamPF008471.4E-10109158IPR001471AP2/ERF domain
PROSITE profilePS5103217.504110166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-18110165IPR001471AP2/ERF domain
SMARTSM003803.4E-30110172IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-7201238IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-4202238IPR001471AP2/ERF domain
SMARTSM003800.0014202238IPR001471AP2/ERF domain
PROSITE profilePS510329.111202238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MHPAMAAAAA AFFHGGDEEE AGVVVAGGAG VGRRAVFGGG GGFNAARPAF VTQQLFPTTA  60
AASLAVTGTA TQQQAMAAVP ELAWGGAAAH WARPPSRTKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAQAAARAYD QAAIKFRGME ADINFVLDDY KEDIGKMSVL  180
SKEELVQVLR RQGAGFVRGS SRFRGVTLHK CGKWEARIGQ LMGKKFVYLG LYDTEMDA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.11e-170ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH03e-99AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A3B6TRZ51e-169A0A3B6TRZ5_WHEAT; Uncharacterized protein
STRINGTraes_7DL_7B0ABD21E.21e-173(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-65AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]