PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_67FF12B6A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 338aa    MW: 36593.6 Da    PI: 5.2759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_67FF12B6A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-11170212754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Traes_7DL_67FF12B6A.1 170 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 212
                            79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.269163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9170212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-16170226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-5176217No hitNo description
CDDcd048732.59E-5266306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAT AAWECNAMGD FFSPACGAGA AGMDCFQERH QPTVSVLPTF  60
TASFEQPHPQ QHQHHQHAAV ASGGFDCLSE VYGGGPFPNA VGGGYGEMGF LAAMDPKAAA  120
DGGGLGACKV EPGLAAVDGG AFGSGQMAAL APAPASRKKR VEGMPSKNLM AERRRRKRLN  180
DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERIRRLQ EEMEEAHPGQ PAAAAPLLSV  240
FRELNPNEML ARNTPKFEVE RKEEDTRVEI YCAAKPGLLL STVSTLDTLG LDIQQCVVSC  300
FNDFAMHASC SEMQREMISA DAIKQELFKN AGYGGGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157177KKRVEGMPSKNLMAERRRRKR
2171178ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3563490.0AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154444.10.0transcription factor ABORTED MICROSPORES-like
SwissprotQ9LSL11e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3B6TSH40.0A0A3B6TSH4_WHEAT; Uncharacterized protein
TrEMBLA0A453TA790.0A0A453TA79_AEGTS; Uncharacterized protein
STRINGTraes_7DL_67FF12B6A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-58beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]