PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_9D1E05CB7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 112aa    MW: 12794.7 Da    PI: 8.6945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_9D1E05CB7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.4e-1816106199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +t+s+v+   +l lp +f+++h  k  ++  ltl+de+g + e  +   k++    l++GW++F+ +++L +gD +vF+l++r+
  Traes_7BS_9D1E05CB7.1  16 FVKPMTQSHVTGGFWLGLPLPFCRKHLPK--RDERLTLKDEQGVESETLYLALKNG----LSAGWRGFAIQHNLVDGDCLVFELINRT 97 
                            89************************433..4557********9999999677776....9************************988 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  Traes_7BS_9D1E05CB7.1  98 TF--KVYIIRQ 106
                            88..9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2510107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2111107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-2614105No hitNo description
PROSITE profilePS5086311.29316107IPR003340B3 DNA binding domain
SMARTSM010193.2E-2116107IPR003340B3 DNA binding domain
PfamPF023624.7E-1616106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MADELQAKLG SGYPSFVKPM TQSHVTGGFW LGLPLPFCRK HLPKRDERLT LKDEQGVESE  60
TLYLALKNGL SAGWRGFAIQ HNLVDGDCLV FELINRTTFK VYIIRQSSYY ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160679.16e-80B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-52Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A3B6SAZ43e-79A0A3B6SAZ4_WHEAT; Uncharacterized protein
TrEMBLA0A446Y7103e-79A0A446Y710_TRITD; Uncharacterized protein
STRINGEMT131062e-79(Aegilops tauschii)
STRINGTraes_7BS_9D1E05CB7.11e-79(Triticum aestivum)
STRINGTraes_7DS_A234A13E1.22e-79(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]