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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_33B5A5D5C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 38163.5 Da PI: 5.0353 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.1e-09 | 275 | 323 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Traes_7BS_33B5A5D5C.1 275 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 323 58*************************9....566*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.04E-10 | 270 | 327 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-17 | 270 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.205 | 272 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 275 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-6 | 275 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-9 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
METNEKNAAD LEEKNXXXXX XXXXXXXXXX XFSLSPEAQM DSSSSALAAM GNPFPPGLWN 60 PPGQNFGLGE TNTNAMLNGH QFSSFLGMLS AATPAYPGAQ SGFMDCGTGF PGLSANSLGA 120 MMDHPFSRNP PMGSFQNDIE TSREMNVDEG CKDALLTGDR QQGDAESSHG VDASSKELSK 180 PECSGGAGQD EGPSVSCPKK RKRPSQDRGV KNVQEGSQQL ATLAAKQEKD DDDKDEPKRP 240 IGTSRKSNGK QTEDKSDAPK EDYIHIRARS GQATNSHSLA ERVRREKISE RMKFLQDLVP 300 GCSKVIGKAV MLDEIINYVQ SLQRQVEFLS MKLSAVNPAL DFNIERILSK D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 203 | PKKRKRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369107 | 0.0 | AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563957.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
TrEMBL | W5HTA6 | 0.0 | W5HTA6_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_65318.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14624 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-58 | bHLH family protein |
Publications ? help Back to Top | |||
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