PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_375BA0ECA.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 88aa    MW: 9902.16 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_375BA0ECA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-0914551554
                           HHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                           +iN+ +++L++llP+ +  + +s   s   +L++++ YIksL
  Traes_7AS_375BA0ECA.1 14 EINELISRLQTLLPTtRRrGSSSSQASTTKMLKETCSYIKSL 55
                           7**************6665555556****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.305155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-4961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-101275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-61455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-91459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGRRSRGSV SEEEINELIS RLQTLLPTTR RRGSSSSQAS TTKMLKETCS YIKSLHREVD  60
DLSDRLSDLM STMDNNSPAA EIIRSLLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148242.12e-44uncharacterized protein LOC100281850
SwissprotA2X9L82e-41ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX02e-41ILI5_ORYSJ; Transcription factor ILI5
TrEMBLW5HDU95e-56W5HDU9_WHEAT; Uncharacterized protein
STRINGMLOC_55094.11e-42(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-09bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]