PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_ACAC47D88.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 193aa    MW: 21281 Da    PI: 9.6539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_ACAC47D88.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12749754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Traes_7AL_ACAC47D88.1  7 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 49
                           79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.98149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-17575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-10649IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-12754No hitNo description
Gene3DG3DSA:4.10.280.102.4E-16762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.40E-5125181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL HKISNLQNEL  60
ESSPSMPSLP PTPTSFHPVT PTLPALPSRV KEELCPSALP SPTGQQPTVE VRLREGRAVN  120
IHMLCPRRPG LVLSAMKAIE ALGLDVQQAV ISCFNGFALD VFKAEQCKDG PGLQPEEIKA  180
VLLQSAGFHL PAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591210.0AK359121.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616517.11e-112PREDICTED: transcription factor ICE1
RefseqXP_015697674.11e-113PREDICTED: LOW QUALITY PROTEIN: transcription factor ICE1, partial
SwissprotQ9LSE21e-100ICE1_ARATH; Transcription factor ICE1
TrEMBLM8A1321e-139M8A132_TRIUA; Transcription factor ICE1
STRINGMLOC_76805.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-90bHLH family protein