PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_2433E45D7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 63aa    MW: 7168.41 Da    PI: 10.4626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_2433E45D7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.51.3e-072562143
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAa 43
                           s+++ V+ +k  g+W+A+I         +k ++lg ++t e+ a
  Traes_7AL_2433E45D7.1 25 SRFRSVTLHK-CGKWEARIGQlM----GKKFVYLGLYDT-EMDA 62
                           789*******.7******77733....25**********.8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-72563IPR016177DNA-binding domain
SMARTSM003800.00472663IPR001471AP2/ERF domain
PROSITE profilePS510328.8472663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-52663IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MSMLSKEELV QVLRRQGAGF VRGSSRFRSV TLHKCGKWEA RIGQLMGKKF VYLGLYDTEM  60
DAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573936e-87AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.17e-33ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH03e-33AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A446XYC71e-36A0A446XYC7_TRITD; Uncharacterized protein
TrEMBLM0W3M65e-37M0W3M6_HORVV; Uncharacterized protein
TrEMBLM8A4F91e-36M8A4F9_TRIUA; Floral homeotic protein APETALA 2
STRINGTraes_7AL_2433E45D7.15e-39(Triticum aestivum)
STRINGTRIUR3_10274-P12e-37(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.25e-30AP2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]